We recently noticed that with our own elements (MY_ELE), the aperture in the partran1.out seems to be written a factor 10 too low. See e.g. element 382 of the attached file showing 4mm. In tracewin.out the same element shows 40mm. I can also attach a project example if you cannot reproduce, but that is a bit more tedious in this case.
Partran does not seem to consider this 4mm internally, the plots generated in tracewin all seem to assume 40mm as is set in the command unless I made a mistake:
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MY_ELE(raster) 0 40 1 39510 0.00131281 1